- Teacher: Stephane RIGAUD
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Available courses
- Teacher: Minh Son PHAN
- Teacher: Laura XENARD
Using TrackMate for analysis of time-lapse microscopy movies.
This course is aimed at beginners in bioimage analysis, that wants to learn how to analyse time-lapse movies. Such movies can follow the movement of cells, in 2D or 3D over time, or the motility of organelles and large objects. They offer unique insight into the dynamics of biology objects, on the evolution of their morphology and of molecular processes, imaged via transmission light or fluorescence microscopy.
This half a day course includes a brief theoretical introduction about tracking algorithms, and is followed by a hands-on tutorial. For the tutorial we will use TrackMate (https://imagej.net/plugins/trackmate/), which is a somewhat popular Fiji plugin for tracking, developed in the Image Analysis Hub.
What do you need to attend:
- Your laptop, Mac or PC
- A mouse (mandatory)
- Fiji installed (https://fiji.sc)
- The following tutorial materials:
https://dl.pasteur.fr/fop/Te8uJcsC/TrackMateTutorialMaterial-2025.zip
For more information contact Jean-Yves.
- Teacher: Jean-Yves TINEVEZ
- Teacher: Marvin ALBERT
- Teacher: Vincent GUILLEMOT
- Teacher: Frédéric LEMOINE
- Teacher: Nicolas MAILLET
- Teacher: Emmanuelle PERMAL
- Teacher: Emeline PERTHAME
Introduction to R programming
- Teacher: Anthony BERTRAND
- Teacher: Andela DAVIDOVIC
- Teacher: Blaise LI
- Teacher: Sébastien MELLA
Session in French – Confidence intervals and Hypothesis testing: a little bit of theory and practice with R
6/11/2023 – Full day
8/11/2023 – Afternoon
9/11/2023 – Afternoon
- Teacher: Juliette MEYER
- Teacher: Thomas OBADIA
The basics of linear models with examples in R
- Teacher: Anthony BERTRAND
- Teacher: Elise JACQUEMET
- Teacher: Hugo VARET
An introduction to multivariate statistical methods with examples in R
- Teacher: Evangelia ELEFTHERIOU
- Teacher: Vincent LAVILLE
Introduction to R programming
- Teacher: Andela DAVIDOVIC
- Teacher: Blaise LI
- Teacher: Sébastien MELLA
Session in French – Confidence intervals and Hypothesis testing: a little bit of theory and practice with R
6/11/2023 – Full day
8/11/2023 – Afternoon
9/11/2023 – Afternoon
- Teacher: Juliette MEYER
- Teacher: Thomas OBADIA
The basics of linear models with examples in R
- Teacher: Elise JACQUEMET
- Teacher: Hugo VARET
An introduction to multivariate statistical methods with examples in R
- Teacher: Vincent LAVILLE
- Teacher: Violaine SAINT-ANDRE
Objective:
Be able to analyze ChIP-seq data from sequencing reads to functional interpretation
- Teacher: Anthony BERTRAND
- Teacher: Emmanuelle PERMAL
- Teacher: Violaine SAINT-ANDRE
- Teacher: Minh Son PHAN
- Teacher: Jean-Yves TINEVEZ
- Teacher: Minh Son PHAN
- Teacher: Son Phan
- Teacher: Jean-Yves TINEVEZ
Tutorial on how to use QuPath for large fixed images analysis and in particular histopathological images.
- Teacher: Gaëlle LETORT
- Teacher: Jean-Yves TINEVEZ
- Teacher: Gaëlle LETORT
- Teacher: Jean-Yves TINEVEZ
Cours d'Introduction à la programmation en R
- Teacher: Vincent GUILLEMOT
- Teacher: Yoann Madec
Cours d'Introduction à la programmation en R
- Teacher: Vincent GUILLEMOT
- Teacher: Yoann Madec
- Teacher: Hervé BOURHY
- Teacher: Malika JELLAOUI
- Teacher: Perrine PARIZE
Formation nationale centre antirabique
- Teacher: Hervé BOURHY
- Teacher: Malika JELLAOUI
- Teacher: Perrine PARIZE
Description
- Teacher: Claudia CHICA
- Teacher: Bernd JAGLA
- Teacher: Yann LOE MIE
- Teacher: Sébastien MELLA
- Teacher: Olivier MIRABEAU