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Introduction to R programming
- トレーナー: BARTHOME Eli
- トレーナー: BERTRAND Anthony
- トレーナー: DAVIDOVIC Andela
- トレーナー: LI Blaise
- トレーナー: MELLA Sébastien
Introduction to R programming
- トレーナー: BARTHOME Eli
- トレーナー: BERTRAND Anthony
- トレーナー: DAVIDOVIC Andela
- トレーナー: LI Blaise
- トレーナー: MELLA Sébastien
Session in French – Confidence intervals and Hypothesis testing: a little bit of theory and practice with R
6/11/2023 – Full day
8/11/2023 – Afternoon
9/11/2023 – Afternoon
- トレーナー: BARTHOME Eli
- トレーナー: BERTRAND Anthony
- トレーナー: CAMPAGNE Pascal
- トレーナー: MEYER Juliette
- トレーナー: OBADIA Thomas
Confidence intervals and Hypothesis testing: a little bit of theory and practice with R
11/04/2024 & 12/04/2024 – Full day
- トレーナー: BARTHOME Eli
- トレーナー: BERTRAND Anthony
- トレーナー: CAMPAGNE Pascal
- トレーナー: MEYER Juliette
- トレーナー: OBADIA Thomas
The basics of linear models with examples in R
- トレーナー: BARTHOME Eli
- トレーナー: BERTRAND Anthony
- トレーナー: JACQUEMET Elise
- トレーナー: VARET Hugo
The basics of linear models with examples in R
- トレーナー: BARTHOME Eli
- トレーナー: BERTRAND Anthony
- トレーナー: JACQUEMET Elise
- トレーナー: VARET Hugo
An introduction to multivariate statistical methods with examples in R
- トレーナー: BARTHOME Eli
- トレーナー: BERTRAND Anthony
- トレーナー: JULIENNE Hanna
- トレーナー: LAVILLE Vincent
- トレーナー: SAINT-ANDRE Violaine
- トレーナー: VOLANT Stevenn
An introduction to multivariate statistical methods with examples in R
- トレーナー: BARTHOME Eli
- トレーナー: BERTRAND Anthony
- トレーナー: JULIENNE Hanna
- トレーナー: LAVILLE Vincent
- トレーナー: SAINT-ANDRE Violaine
Objectives: knowing how to
Navigate the filesystem, identify files by their path, create, move, rename, delete files and directories
Extract information from text files
- トレーナー: GUGLIELMINI Julien
- トレーナー: MAILLET Nicolas
Objectives:
Understand biological information available online
Understand sequence comparisons using local alignment
Find information about unknown sequences, using online tools
- トレーナー: Bigot Thomas
- トレーナー: LOPEZ-MAESTRE Hélène
- トレーナー: MORNICO Damien
This course is intended to provide the students with the prerequisites needed to be able to follow the courses of the Bioinformatics track dedicated to the analysis of NGS data (B4, B5, B6, B7, B8, B9, B10, B11).
The course has three main parts:
1 - Main UNIX commands
2 - Main R commands / getting acquainted with R scripts and Rstudio
3 - Main Galaxy commands
- トレーナー: BAILLET Victoire
- トレーナー: LI Blaise
Objectives:
Understand the key concepts underlying the quantification and comparison of OMIC datasets
Perform the initial steps of most HTS data analysis
- トレーナー: BAILLET Victoire
- トレーナー: CHICA Claudia
Objectives:
Design a successful transcriptomics experiment
How to get differential expressed genes from raw data
- トレーナー: JACQUEMET Elise
- トレーナー: PERMAL Emmanuelle
Objectives:
Learn the key steps to obtain genetic reliable variants from raw sequencing reads
First applications : use filtered files of variants to perform basic analyses
- トレーナー: CAMPAGNE Pascal
- トレーナー: PAIN Adrien
Objectives:
Getting exposed to important applications in the analysis of genetic data, genomewide
Analysing genomic data with R and other popular software
- トレーナー: LAVILLE Vincent
- トレーナー: VAYSSE Amaury
Objective:
Be able to analyze ChIP-seq data from sequencing reads to functional interpretation
- トレーナー: BERTRAND Anthony
- トレーナー: PERMAL Emmanuelle
- トレーナー: SAINT-ANDRE Violaine
Objectives:
Get acquainted with the key concepts of scRNAseq raw data analysis, quantification, functional characterization and visualization.
- トレーナー: CHICA Claudia
- トレーナー: FISCHER Stephan
- トレーナー: JAGLA Bernd
- トレーナー: LOE MIE Yann
- トレーナー: MELLA Sébastien
- トレーナー: MIRABEAU Olivier
Objectives
Understand the key concepts of functional analysis
Perform functional analysis on RNA-Seq data on a simple design using R tools
- トレーナー: BARTHOME Eli
- トレーナー: PIETROSEMOLI Natalia
Objectives:
understand more complex but useful options and commands
learn regular expressions and few commands using them,
everything needed to create your firsts own scripts.
- トレーナー: GUGLIELMINI Julien
- トレーナー: Kende Julia
- トレーナー: MAILLET Nicolas
Using TrackMate for analysis of time-lapse microscopy movies.
This course is aimed at beginners in bioimage analysis, that wants to learn how to analyse time-lapse movies. Such movies can follow the movement of cells, in 2D or 3D over time, or the motility of organelles and large objects. They offer unique insight into the dynamics of biology objects, on the evolution of their morphology and of molecular processes, imaged via transmission light or fluorescence microscopy.
This half a day course includes a brief theoretical introduction about tracking algorithms, and is followed by a hands-on tutorial. For the tutorial we will use TrackMate (https://imagej.net/plugins/trackmate/), which is a somewhat popular Fiji plugin for tracking, developed in the Image Analysis Hub.
What do you need to attend:
- Your laptop, Mac or PC
- A mouse (mandatory)
- Fiji installed (https://fiji.sc)
- The following tutorial materials: https://dl.pasteur.fr/fop/ybFP2XYA/TrackMateTutorialMaterial.zip
For more information contact Jean-Yves.
- トレーナー: TINEVEZ Jean-Yves
Using TrackMate for analysis of time-lapse microscopy movies.
This course is aimed at beginners in bioimage analysis, that wants to learn how to analyse time-lapse movies. Such movies can follow the movement of cells, in 2D or 3D over time, or the motility of organelles and large objects. They offer unique insight into the dynamics of biology objects, on the evolution of their morphology and of molecular processes, imaged via transmission light or fluorescence microscopy.
This half a day course includes a brief theoretical introduction about tracking algorithms, and is followed by a hands-on tutorial. For the tutorial we will use TrackMate (https://imagej.net/plugins/trackmate/), which is a somewhat popular Fiji plugin for tracking, developed in the Image Analysis Hub.
What do you need to attend:
- Your laptop, Mac or PC
- A mouse (mandatory)
- Fiji installed (https://fiji.sc)
- The following tutorial materials: https://dl.pasteur.fr/fop/ybFP2XYA/TrackMateTutorialMaterial.zip
For more information contact Jean-Yves.
- トレーナー: TINEVEZ Jean-Yves
- トレーナー: LETORT Gaëlle
- トレーナー: TINEVEZ Jean-Yves
- トレーナー: RIGAUD Stephane
- トレーナー: TINEVEZ Jean-Yves
- トレーナー: PHAN Minh Son
- トレーナー: Phan Son
- トレーナー: TINEVEZ Jean-Yves
- トレーナー: RIGAUD Stephane
- トレーナー: TINEVEZ Jean-Yves
- トレーナー: RIGAUD Stephane
- トレーナー: TINEVEZ Jean-Yves
- トレーナー: PHAN Minh Son
- トレーナー: TINEVEZ Jean-Yves
- トレーナー: PHAN Minh Son
- トレーナー: Phan Son
- トレーナー: TINEVEZ Jean-Yves
Tutorial on how to use QuPath for large fixed images analysis and in particular histopathological images.
- トレーナー: LETORT Gaëlle
- トレーナー: TINEVEZ Jean-Yves
- トレーナー: LETORT Gaëlle
- トレーナー: TINEVEZ Jean-Yves
Cours d'Introduction à la programmation en R
- トレーナー: GUILLEMOT Vincent
- トレーナー: Madec Yoann
Cours d'Introduction à la programmation en R
- トレーナー: GUILLEMOT Vincent
- トレーナー: Madec Yoann
- トレーナー: BOURHY Hervé
- トレーナー: JELLAOUI Malika
- トレーナー: PARIZE Perrine
Formation nationale centre antirabique
- トレーナー: BOURHY Hervé
- トレーナー: JELLAOUI Malika
- トレーナー: PARIZE Perrine
Description
- トレーナー: CHICA Claudia
- トレーナー: JAGLA Bernd
- トレーナー: LOE MIE Yann
- トレーナー: MELLA Sébastien
- トレーナー: MIRABEAU Olivier